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14.5 Nucleic acids · Part 2

Chapter 9: 14 · CHEMISTRY-VOLUME 2

group of the sugar. Nucleotides are linked in DNA and RNA by phospho diester bond between ’ OH group of one nucleotide and ’ OH group on another nucleotide. Sugar + Base Nucleoside Nucleoside + Phosphoric acid Nucleotide (Nucleic Acid) nNucleotide Polynucleotide . .

Double strand helix structure of DNA In early 1950s, Rosalind Franklin and Maurice Wilkins used X-ray diffraction to unravel the structure of DNA. The DNA fibers produced a characteristic diffraction pattern. The central X shaped pattern indicates a helix, whereas the heavy black arcs at the top and bottom of the diffraction pattern reveal the spacing of the stacked bases. Figure .

DNA X-ray diffraction XII XII - - - - The structure elucidation of DNA by Watson and Crick in was a momentous event in science. They postulated a -dimensional model of DNA structure which consisted of two antiparallel helical DNA chains wound around the same axis to form a right-handed double helix. The hydrophilic backbones of alternating deoxyribose and phosphate groups are on the outside of the double helix, facing the surrounding water. The purine and pyrimidine bases of both strands are stacked inside the double helix, with their hydrophobic and ring structures very close together and perpendicular to the long axis, thereby reducing the repulsions between the charged phosphate groups.

The offset pairing of the two strands creates a major groove and minor groove on the surface of the duplex. The model revealed that, there are . base pairs ( Å) per turn of the helix and . Å between the stacked bases.

They also found that each base is hydrogen bonded to a base in opposite strand to form a planar base pair. Two hydrogen bonds are formed between adenine and thymine and three hydrogen bonds are formed between guanine and cytosine. Other pairing tends to destabilize the double helical structure. This specific association of the two chains of the double helix is known Figure .

DNA Double Helix H C HN Tymidine Adenine Cytosine Guanine H-bonds H-bonds

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